Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015821100.1_cds_XP_016500633.1_14441
CDS Infomation

[gene=LOC107819072] [db_xref=GeneID:107819072] [protein=protein RRP6-like 2] [protein_id=XP_016500633.1] [location=join(38656..39303,40163..40315,42066..42224,42295..42378,47319..47398,47598..47648,49789..49897,50502..50584,50776..50821,50933..51020,51101..51270,51660..51866,51960..52055,52244..53005)] [gbkey=CDS]
Sequence

ATGGAGACGGATTCATCTGACGAAGATATCTCCAAGAAGGCCGAGGATACGTTACGCAAA
GTCACAAGTGGTCCGTTGCCATCTACCATTGGGAAGCTGTCTGGCTCTTCAAGAGGAATA
CCCACCGATAGAGACTTTCATTTCTACAACAATTTCAGCGAATTCAGGACCCCCATTTCA
GAAATCGACAAGAAATCCAAGGAAATCTTGGAGAGAGTCGGGGCATTGTCGCAATTATGG
GGAAAACCTATGTCGTTTCCGGGGGAGGATCCGGATGAAGAGGAAACTGGAGATTGGCTG
GTCAACATAAACGACGACGTGTTTGAGAAACTGGCATCATCCTTGGATAACTTTAGGTTG
TTGAGAGAGAAAGAAGAGGAGAGTGGCGTGAAGAATATGGAGGACGGGTTTCAATTGGTG
AGTCGGAAGAAGACTAGGAAAGTAGAACATAATAGTAATGTAAGTAGTGTGGAGAAGGAG
AAGGGGGTGAAAGTGGCTACGAAAGTGAAGCCAAAGATTCCGTTTCATATACCAAGCATC
CCGAGGCCGCAGGACGAGTATAAAATTATTGTTAACAACAAAAATCAGCCTTTTCAGCAT
GTTTGGTTGCAGAGGACTGACGATGGTTCCAGGTTTATGCATCCTCTGGAAAAGTTTGCT
CCCTCAGACTTTGTTGAGAGTGCTGGCATCATTGAGCCTGTCAAACCTCCTCCATTGGAG
ATTACCCCATTCAAGTTTGTGGAAGAGGTCAAAGATCTGAAGCAGTTAGCAGCCAAGTTG
CGTGCTGTGGATGAGTTTGCGGTTGATTTGGAACATAATCAATATAGATCTTTTCAAGGA
TTGACCTGCTTGATGCAAATATCCACTAGAACTGAAGATTTTGTTGTTGACACTCTGAAG
CTTCGCGTTCATATTGGCCCATATCTAAGAGATGTTTTTAAGGACCACATGAAGAAAAAG
GTGATGCATGGTGCTGATCGAGATATTGTGTGGCTTCAACGTGACTTTGGCATATACGTC
TGCAATATGTTCGACACTGGGCAGGCCTCAAGGGTTTTGAAACTGGAAAGAAACAGCCTG
GAGTATCTGCTACAACATTTTTGTGGAGTTACGGCAAACAAAGAGTATCAGAATGCAGAT
TGGAGATTACGCCCACTTCCTGTAGAGATGATGAGATATGCTAGAGAAGATACACACTAT
CTCTTGTACATTTATGACGTTATGAGGATGGAATTGCTCTCTTCTTCTGCTGACAATGAA
TCTCCTGATGCTTCTCTAATAGAGGTGTACAAGCGCAGTTATGATATATGCATGCAGCTG
TATGAAAAAGAACTTTTGACTGATAGCTCATATCAACACATATATGGATTACAGGGAGCT
GGATTCAATGCTCAGCAGCTTGCAATTGTTGCTGGGCTGTATGAGTGGAGAGATGTTATT
GCCCGAGCAGAAGATGAGAGTACTGGCTATGTTTTGCCGAACAAAGAACTTCTTGAAATT
GCTAAGCAGATGCCTCTTACCACAAGCAAATTAAAGCGATCGATGAAATCAAAGCACCCA
TATGTTGAGCGTAATCTTGGTGCTGTTGTCAGCATCATTAGGCAGTCTGTTCAAAATTCG
GCTGCATATGAAGCAGCTGTGGAACTTCTGAAAGAAAGGCGCTTAGAATTACCAGCTGAA
GAAGACATTGTGGCTACTGAGGGCGCTGAAATGTTAGTTGAAACTTCTGAGCCACTGAAA
GCAGCAACAGGGACAGAAACTTCAGTTGTTTGCAGTTCACCTGAAAGTGCTGTCACCAAA
GTTGATTTTAATGGACCTGGTGACACCTCTGAACATCATAGTGAACGTGGTGGTTTAAGA
GCTACTTCTTCAGGACAGGTTGAAGTAACTATTCAGGCAATTAAGAAACCCAGCCGTGGT
CTTGGGATGTTACTAGGGAGTGCAGCAAAGAGGAAGCTGCACCCTGATAAAAAAGAGCAG
GAAGAGATCCAAGTGCAGCAGATCAAGTCTTCGGTGAGCCTTCCATTCCATGCATTTTCA
GGCAGGACTGAACAATTGCAGCAAGCTGCAACAGCACCTGCTAAAACATTACAAATTAAC
CATAGAGAGGAACCTGTTGCTACTAATTCCAAGTTAGACGTTATAACCCTGGACACTGAT
TCAGATGACGGGAAATCATTAAAAGGTGAGCTATCAATTGGAGAACAGGAAAATTCCTTT
GCCATGCCGGTAGCTACTTCAAAGTTAGAAGATGTTATCTTACTGGACACTGATTCAGAT
CTTGAGGAATCAGTCAAAGATGACTCAGAAGCTGCTAACAATCCGCCTGAGTGTGAGGAA
AACAAAATTGCAGGTTCTGCTGAGGAGATGGATGAAGGGGATGAGAACATGTCCCTGTCT
GATCTTTCCTCTAGCTTCAAGAAGTGTTTCCATTCAATAAATCAAAAGAGTAATGCGCAG
CTCGCTGAGAAAGCACAAGCACATGAAGGCCAGTTGAAAGTTCAGCCTTTTGACTACGAA
GCAGCAAGGAAGCAAGTGTTATTTGGAGAAGATCCAGGTAAAAGAAAGCAGGAAACAGAA
GGTGATGAGCATCGTAGGAGTAGGACTGGTAAAGGTGATAAGACGGATTTACTCTTAGGT
CAGCCGCCAAATATTGAAGGGACAGCAGAGTTGCAGCAAGGTAGAAGGCGTCAAGCTTTT
CCAGCTACTGGAAATCGAAGCTATACTTTCCGCTAG

Peptide Sequence

PEP ID

XP_016500633.1
PEP Infomation

PREDICTED: protein RRP6-like 2 [Nicotiana tabacum]
Sequence

METDSSDEDISKKAEDTLRKVTSGPLPSTIGKLSGSSRGIPTDRDFHFYNNFSEFRTPIS
EIDKKSKEILERVGALSQLWGKPMSFPGEDPDEEETGDWLVNINDDVFEKLASSLDNFRL
LREKEEESGVKNMEDGFQLVSRKKTRKVEHNSNVSSVEKEKGVKVATKVKPKIPFHIPSI
PRPQDEYKIIVNNKNQPFQHVWLQRTDDGSRFMHPLEKFAPSDFVESAGIIEPVKPPPLE
ITPFKFVEEVKDLKQLAAKLRAVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLK
LRVHIGPYLRDVFKDHMKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERNSL
EYLLQHFCGVTANKEYQNADWRLRPLPVEMMRYAREDTHYLLYIYDVMRMELLSSSADNE
SPDASLIEVYKRSYDICMQLYEKELLTDSSYQHIYGLQGAGFNAQQLAIVAGLYEWRDVI
ARAEDESTGYVLPNKELLEIAKQMPLTTSKLKRSMKSKHPYVERNLGAVVSIIRQSVQNS
AAYEAAVELLKERRLELPAEEDIVATEGAEMLVETSEPLKAATGTETSVVCSSPESAVTK
VDFNGPGDTSEHHSERGGLRATSSGQVEVTIQAIKKPSRGLGMLLGSAAKRKLHPDKKEQ
EEIQVQQIKSSVSLPFHAFSGRTEQLQQAATAPAKTLQINHREEPVATNSKLDVITLDTD
SDDGKSLKGELSIGEQENSFAMPVATSKLEDVILLDTDSDLEESVKDDSEAANNPPECEE
NKIAGSAEEMDEGDENMSLSDLSSSFKKCFHSINQKSNAQLAEKAQAHEGQLKVQPFDYE
AARKQVLFGEDPGKRKQETEGDEHRRSRTGKGDKTDLLLGQPPNIEGTAELQQGRRRQAF
PATGNRSYTFR

Transcript Sequence

Gene sequence data has not been registered.